Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SYNE3Q6ZMZ3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 SLC22A20-204ENST00000530038 1673 ntBASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 AC096734.2-201ENST00000562054 433 ntBASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 AC064836.3-201ENST00000607928 673 ntBASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 ACTL9-202ENST00000612068 1252 ntBASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 AC012569.1-201ENST00000591191 1524 ntBASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SYNE3Q6ZMZ3 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 AL603756.1-201ENST00000606511 2163 ntBASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 IGLL3P-201ENST00000412472 434 ntBASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 AC007967.2-201ENST00000432613 625 ntBASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 MIR4515-201ENST00000584082 81 ntBASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 AC007064.4-201ENST00000637740 555 ntBASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 AL139011.1-202ENST00000642063 584 ntBASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE3Q6ZMZ3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 CYP2A7P1-201ENST00000595391 815 ntBASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 AC027601.4-201ENST00000611259 610 ntBASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE3Q6ZMZ3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms