Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.35□□□□□ -0.11
ABCA4P78363 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.35□□□□□ -0.11
ABCA4P78363 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.35□□□□□ -0.11
ABCA4P78363 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.35□□□□□ -0.11
ABCA4P78363 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
ABCA4P78363 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.35□□□□□ -0.11
ABCA4P78363 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 AL021920.2-201ENST00000624828 1351 ntBASIC14.34□□□□□ -0.11
ABCA4P78363 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 AL390961.4-201ENST00000623958 2535 ntBASIC14.34□□□□□ -0.11
ABCA4P78363 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 TREML5P-201ENST00000421694 576 ntBASIC14.34□□□□□ -0.11
ABCA4P78363 AC142381.1-201ENST00000426099 345 ntBASIC14.34□□□□□ -0.11
ABCA4P78363 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.34□□□□□ -0.11
ABCA4P78363 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.34□□□□□ -0.11
ABCA4P78363 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
ABCA4P78363 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.34□□□□□ -0.11
ABCA4P78363 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.34□□□□□ -0.11
ABCA4P78363 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
ABCA4P78363 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.34□□□□□ -0.11
ABCA4P78363 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
ABCA4P78363 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.34□□□□□ -0.11
ABCA4P78363 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA4P78363 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA4P78363 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA4P78363 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA4P78363 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
ABCA4P78363 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA4P78363 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
ABCA4P78363 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA4P78363 SPCS2P4-201ENST00000436160 681 ntBASIC14.33□□□□□ -0.12
ABCA4P78363 KRT18P34-201ENST00000488218 1270 ntBASIC14.33□□□□□ -0.12
ABCA4P78363 MIR6805-201ENST00000615055 62 ntBASIC14.33□□□□□ -0.12
ABCA4P78363 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA4P78363 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
ABCA4P78363 OR6D1P-202ENST00000641007 5290 ntBASIC14.33□□□□□ -0.12
ABCA4P78363 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
ABCA4P78363 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA4P78363 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.33□□□□□ -0.12
ABCA4P78363 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA4P78363 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA4P78363 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
ABCA4P78363 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA4P78363 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
ABCA4P78363 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA4P78363 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.32□□□□□ -0.12
ABCA4P78363 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.32□□□□□ -0.12
ABCA4P78363 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms