Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 TSPY14P-201ENST00000303979 915 ntBASIC12.61□□□□□ -0.39
FOXA3P55318 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 Telomerase-vert.1-201ENST00000363312 438 ntBASIC12.61□□□□□ -0.39
FOXA3P55318 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 AP000523.1-201ENST00000398242 1049 ntBASIC12.61□□□□□ -0.39
FOXA3P55318 SAPCD2P2-201ENST00000431719 1174 ntBASIC12.61□□□□□ -0.39
FOXA3P55318 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.61□□□□□ -0.39
FOXA3P55318 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 PPOX-214ENST00000535223 664 ntTSL 3 BASIC12.61□□□□□ -0.39
FOXA3P55318 FITM1-202ENST00000559294 800 ntBASIC12.61□□□□□ -0.39
FOXA3P55318 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 AC026471.5-201ENST00000615068 467 ntBASIC12.61□□□□□ -0.39
FOXA3P55318 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 LINC00895-201ENST00000629028 1637 ntBASIC12.61□□□□□ -0.39
FOXA3P55318 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 C1R-202ENST00000536053 2347 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.61□□□□□ -0.39
FOXA3P55318 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.61□□□□□ -0.39
FOXA3P55318 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
FOXA3P55318 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC12.61□□□□□ -0.39
FOXA3P55318 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA3P55318 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 MYO15B-237ENST00000642007 4893 ntBASIC12.6□□□□□ -0.39
FOXA3P55318 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA3P55318 AC010491.1-201ENST00000563101 2797 ntBASIC12.6□□□□□ -0.39
FOXA3P55318 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 AC002310.6-201ENST00000624451 1377 ntBASIC12.6□□□□□ -0.39
FOXA3P55318 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA3P55318 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 MIR935-201ENST00000401179 91 ntBASIC12.6□□□□□ -0.39
FOXA3P55318 KRT18P48-201ENST00000434763 852 ntBASIC12.6□□□□□ -0.39
FOXA3P55318 UBE2SP1-201ENST00000450587 669 ntBASIC12.6□□□□□ -0.39
FOXA3P55318 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA3P55318 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC12.6□□□□□ -0.39
FOXA3P55318 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA3P55318 C2orf69P3-201ENST00000565542 1120 ntBASIC12.6□□□□□ -0.39
FOXA3P55318 NAA38-203ENST00000575071 553 ntTSL 2 BASIC12.6□□□□□ -0.39
FOXA3P55318 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC12.6□□□□□ -0.39
FOXA3P55318 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC12.6□□□□□ -0.39
FOXA3P55318 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
FOXA3P55318 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
FOXA3P55318 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms