Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
NEDD4P46934 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.62■□□□□ 0.73
NEDD4P46934 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.62■□□□□ 0.73
NEDD4P46934 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 WASH6P-202ENST00000359512 1437 ntBASIC19.62■□□□□ 0.73
NEDD4P46934 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC19.62■□□□□ 0.73
NEDD4P46934 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 AC134684.3-201ENST00000641758 218 ntBASIC19.62■□□□□ 0.73
NEDD4P46934 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.62■□□□□ 0.73
NEDD4P46934 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.62■□□□□ 0.73
NEDD4P46934 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
NEDD4P46934 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NEDD4P46934 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
NEDD4P46934 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NEDD4P46934 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NEDD4P46934 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
NEDD4P46934 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.61■□□□□ 0.73
NEDD4P46934 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.61■□□□□ 0.73
NEDD4P46934 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.61■□□□□ 0.73
NEDD4P46934 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.61■□□□□ 0.73
NEDD4P46934 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.61■□□□□ 0.73
NEDD4P46934 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.61■□□□□ 0.73
NEDD4P46934 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.61■□□□□ 0.73
NEDD4P46934 AL161645.1-201ENST00000622716 1255 ntBASIC19.61■□□□□ 0.73
NEDD4P46934 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
NEDD4P46934 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
NEDD4P46934 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
NEDD4P46934 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NEDD4P46934 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
NEDD4P46934 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.61■□□□□ 0.73
NEDD4P46934 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NEDD4P46934 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.6■□□□□ 0.73
NEDD4P46934 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
NEDD4P46934 TFAMP1-201ENST00000412727 736 ntBASIC19.6■□□□□ 0.73
NEDD4P46934 AC211486.1-202ENST00000416371 468 ntBASIC19.6■□□□□ 0.73
NEDD4P46934 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
NEDD4P46934 AL671277.1-201ENST00000429656 993 ntBASIC19.6■□□□□ 0.73
NEDD4P46934 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 ACTG1P14-201ENST00000446382 1122 ntBASIC19.6■□□□□ 0.73
NEDD4P46934 AC004967.1-201ENST00000453589 447 ntBASIC19.6■□□□□ 0.73
NEDD4P46934 AC211476.1-201ENST00000503899 468 ntBASIC19.6■□□□□ 0.73
NEDD4P46934 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC19.6■□□□□ 0.73
NEDD4P46934 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NEDD4P46934 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.6■□□□□ 0.73
NEDD4P46934 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.6■□□□□ 0.73
NEDD4P46934 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.6■□□□□ 0.73
NEDD4P46934 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.6■□□□□ 0.73
NEDD4P46934 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
NEDD4P46934 AC006538.3-201ENST00000612495 578 ntBASIC19.6■□□□□ 0.73
NEDD4P46934 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC19.6■□□□□ 0.73
NEDD4P46934 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC19.6■□□□□ 0.73
NEDD4P46934 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC19.6■□□□□ 0.73
NEDD4P46934 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
NEDD4P46934 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NEDD4P46934 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NEDD4P46934 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms