Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC093724.1-201ENST00000448659 1027 ntBASIC19.1■□□□□ 0.65
SMARCA1P28370 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC19.1■□□□□ 0.65
SMARCA1P28370 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.1■□□□□ 0.65
SMARCA1P28370 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SMARCA1P28370 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.09■□□□□ 0.65
SMARCA1P28370 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.09■□□□□ 0.65
SMARCA1P28370 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SMARCA1P28370 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SMARCA1P28370 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.09■□□□□ 0.65
SMARCA1P28370 AC142381.1-201ENST00000426099 345 ntBASIC19.09■□□□□ 0.65
SMARCA1P28370 POU5F1P6-201ENST00000466990 990 ntBASIC19.09■□□□□ 0.65
SMARCA1P28370 IGHV3-62-201ENST00000520057 340 ntBASIC19.09■□□□□ 0.65
SMARCA1P28370 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC19.09■□□□□ 0.65
SMARCA1P28370 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.09■□□□□ 0.65
SMARCA1P28370 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
SMARCA1P28370 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
SMARCA1P28370 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SMARCA1P28370 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.09■□□□□ 0.65
SMARCA1P28370 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SMARCA1P28370 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
SMARCA1P28370 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SMARCA1P28370 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC19.09■□□□□ 0.65
SMARCA1P28370 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
SMARCA1P28370 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.08■□□□□ 0.65
SMARCA1P28370 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SMARCA1P28370 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.08■□□□□ 0.64
SMARCA1P28370 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC19.08■□□□□ 0.64
SMARCA1P28370 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
SMARCA1P28370 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SMARCA1P28370 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
SMARCA1P28370 RPS8P6-201ENST00000426177 609 ntBASIC19.08■□□□□ 0.64
SMARCA1P28370 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.08■□□□□ 0.64
SMARCA1P28370 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SMARCA1P28370 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC19.08■□□□□ 0.64
SMARCA1P28370 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.08■□□□□ 0.64
SMARCA1P28370 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.08■□□□□ 0.64
SMARCA1P28370 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
SMARCA1P28370 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
SMARCA1P28370 AL596442.2-201ENST00000610240 980 ntBASIC19.08■□□□□ 0.64
SMARCA1P28370 AC009093.7-201ENST00000623853 1223 ntBASIC19.08■□□□□ 0.64
SMARCA1P28370 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.08■□□□□ 0.64
SMARCA1P28370 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SMARCA1P28370 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMARCA1P28370 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.08■□□□□ 0.64
SMARCA1P28370 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.08■□□□□ 0.64
SMARCA1P28370 NKILA-202ENST00000614771 2598 ntBASIC19.08■□□□□ 0.64
SMARCA1P28370 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMARCA1P28370 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMARCA1P28370 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SMARCA1P28370 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SMARCA1P28370 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.08■□□□□ 0.64
SMARCA1P28370 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SMARCA1P28370 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SMARCA1P28370 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.07■□□□□ 0.64
SMARCA1P28370 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCA1P28370 AC005237.2-201ENST00000434368 219 ntBASIC19.07■□□□□ 0.64
SMARCA1P28370 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.07■□□□□ 0.64
SMARCA1P28370 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 AC023141.5-201ENST00000458585 616 ntBASIC19.07■□□□□ 0.64
SMARCA1P28370 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.07■□□□□ 0.64
SMARCA1P28370 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.07■□□□□ 0.64
SMARCA1P28370 HLA-J-203ENST00000494367 1087 ntBASIC19.07■□□□□ 0.64
SMARCA1P28370 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCA1P28370 AC027612.4-201ENST00000605371 583 ntBASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms