Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC19.33■□□□□ 0.68
ERCC3P19447 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
ERCC3P19447 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.33■□□□□ 0.68
ERCC3P19447 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.33■□□□□ 0.68
ERCC3P19447 U1.21-201ENST00000580816 167 ntBASIC19.33■□□□□ 0.68
ERCC3P19447 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.33■□□□□ 0.68
ERCC3P19447 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.33■□□□□ 0.68
ERCC3P19447 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
ERCC3P19447 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.33■□□□□ 0.68
ERCC3P19447 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.33■□□□□ 0.68
ERCC3P19447 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
ERCC3P19447 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.33■□□□□ 0.68
ERCC3P19447 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.33■□□□□ 0.68
ERCC3P19447 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
ERCC3P19447 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
ERCC3P19447 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 TOP3BP1-201ENST00000420768 1380 ntBASIC19.32■□□□□ 0.68
ERCC3P19447 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 FO538757.1-201ENST00000623083 1397 ntBASIC19.32■□□□□ 0.68
ERCC3P19447 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
ERCC3P19447 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.32■□□□□ 0.68
ERCC3P19447 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC3P19447 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.32■□□□□ 0.68
ERCC3P19447 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC3P19447 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 BAD-207ENST00000544785 525 ntTSL 3 BASIC19.32■□□□□ 0.68
ERCC3P19447 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19.32■□□□□ 0.68
ERCC3P19447 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
ERCC3P19447 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC3P19447 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 AL031055.1-201ENST00000606362 631 ntBASIC19.32■□□□□ 0.68
ERCC3P19447 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.32■□□□□ 0.68
ERCC3P19447 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
ERCC3P19447 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ERCC3P19447 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.32■□□□□ 0.68
ERCC3P19447 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
ERCC3P19447 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
ERCC3P19447 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC3P19447 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC3P19447 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ERCC3P19447 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.31■□□□□ 0.68
ERCC3P19447 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 AC099398.1-201ENST00000567919 2776 ntBASIC19.31■□□□□ 0.68
ERCC3P19447 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ERCC3P19447 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
ERCC3P19447 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
ERCC3P19447 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC3P19447 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.31■□□□□ 0.68
ERCC3P19447 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC19.31■□□□□ 0.68
ERCC3P19447 TREML5P-201ENST00000421694 576 ntBASIC19.31■□□□□ 0.68
ERCC3P19447 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.31■□□□□ 0.68
ERCC3P19447 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ERCC3P19447 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.31■□□□□ 0.68
ERCC3P19447 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.31■□□□□ 0.68
ERCC3P19447 AC140878.1-201ENST00000565277 250 ntBASIC19.31■□□□□ 0.68
ERCC3P19447 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
ERCC3P19447 AC091167.2-201ENST00000579581 588 ntBASIC19.31■□□□□ 0.68
ERCC3P19447 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.31■□□□□ 0.68
ERCC3P19447 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
ERCC3P19447 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms