Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.06■□□□□ 0.16
SEMA3DO95025 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SEMA3DO95025 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.06■□□□□ 0.16
SEMA3DO95025 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.06■□□□□ 0.16
SEMA3DO95025 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.06■□□□□ 0.16
SEMA3DO95025 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SEMA3DO95025 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SEMA3DO95025 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.06■□□□□ 0.16
SEMA3DO95025 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 AC131009.4-201ENST00000624048 1740 ntBASIC16.05■□□□□ 0.16
SEMA3DO95025 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.05■□□□□ 0.16
SEMA3DO95025 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.05■□□□□ 0.16
SEMA3DO95025 HCG4-201ENST00000418983 998 ntBASIC16.05■□□□□ 0.16
SEMA3DO95025 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.05■□□□□ 0.16
SEMA3DO95025 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
SEMA3DO95025 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.05■□□□□ 0.16
SEMA3DO95025 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 AL662844.1-201ENST00000546340 181 ntBASIC16.05■□□□□ 0.16
SEMA3DO95025 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.05■□□□□ 0.16
SEMA3DO95025 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.05■□□□□ 0.16
SEMA3DO95025 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.05■□□□□ 0.16
SEMA3DO95025 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 MIR7706-201ENST00000613747 67 ntBASIC16.05■□□□□ 0.16
SEMA3DO95025 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 AC117500.6-201ENST00000624871 588 ntBASIC16.05■□□□□ 0.16
SEMA3DO95025 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.05■□□□□ 0.16
SEMA3DO95025 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.05■□□□□ 0.16
SEMA3DO95025 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SEMA3DO95025 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
SEMA3DO95025 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.04■□□□□ 0.16
SEMA3DO95025 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.04■□□□□ 0.16
SEMA3DO95025 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.04■□□□□ 0.16
SEMA3DO95025 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 TPM4P1-201ENST00000436100 807 ntBASIC16.04■□□□□ 0.16
SEMA3DO95025 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 AC108073.2-201ENST00000464002 357 ntBASIC16.04■□□□□ 0.16
SEMA3DO95025 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.04■□□□□ 0.16
SEMA3DO95025 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
SEMA3DO95025 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.04■□□□□ 0.16
SEMA3DO95025 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SEMA3DO95025 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.04■□□□□ 0.16
SEMA3DO95025 AC010654.1-201ENST00000615722 808 ntBASIC16.04■□□□□ 0.16
SEMA3DO95025 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.04■□□□□ 0.16
SEMA3DO95025 AP001350.2-201ENST00000625104 1094 ntBASIC16.04■□□□□ 0.16
SEMA3DO95025 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SEMA3DO95025 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SEMA3DO95025 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms