Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SHOX2O60902 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SHOX2O60902 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
SHOX2O60902 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.75■□□□□ 0.27
SHOX2O60902 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SHOX2O60902 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.75■□□□□ 0.27
SHOX2O60902 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.75■□□□□ 0.27
SHOX2O60902 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SHOX2O60902 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.75■□□□□ 0.27
SHOX2O60902 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.75■□□□□ 0.27
SHOX2O60902 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHOX2O60902 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SHOX2O60902 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.75■□□□□ 0.27
SHOX2O60902 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.75■□□□□ 0.27
SHOX2O60902 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 UNC93B2-201ENST00000285383 730 ntBASIC16.74■□□□□ 0.27
SHOX2O60902 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.74■□□□□ 0.27
SHOX2O60902 MIR648-201ENST00000385046 94 ntBASIC16.74■□□□□ 0.27
SHOX2O60902 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.74■□□□□ 0.27
SHOX2O60902 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.74■□□□□ 0.27
SHOX2O60902 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
SHOX2O60902 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.74■□□□□ 0.27
SHOX2O60902 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.74■□□□□ 0.27
SHOX2O60902 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.74■□□□□ 0.27
SHOX2O60902 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.74■□□□□ 0.27
SHOX2O60902 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 SNX33P1-201ENST00000592116 1762 ntBASIC16.74■□□□□ 0.27
SHOX2O60902 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.74■□□□□ 0.27
SHOX2O60902 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHOX2O60902 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SHOX2O60902 AC013726.1-201ENST00000563747 2285 ntBASIC16.73■□□□□ 0.27
SHOX2O60902 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
SHOX2O60902 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 AC041040.2-201ENST00000622926 2899 ntBASIC16.73■□□□□ 0.27
SHOX2O60902 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SHOX2O60902 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms