Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CACNA1FO60840 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.77■□□□□ 0.92
CACNA1FO60840 SLC25A39P2-201ENST00000537614 270 ntBASIC20.77■□□□□ 0.92
CACNA1FO60840 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC20.77■□□□□ 0.92
CACNA1FO60840 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.77■□□□□ 0.92
CACNA1FO60840 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.77■□□□□ 0.92
CACNA1FO60840 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CACNA1FO60840 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1FO60840 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CACNA1FO60840 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1FO60840 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.77■□□□□ 0.92
CACNA1FO60840 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CACNA1FO60840 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1FO60840 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CACNA1FO60840 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
CACNA1FO60840 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1FO60840 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1FO60840 CNN2P2-201ENST00000443536 909 ntBASIC20.77■□□□□ 0.92
CACNA1FO60840 CNN2P3-201ENST00000450201 906 ntBASIC20.77■□□□□ 0.92
CACNA1FO60840 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.77■□□□□ 0.92
CACNA1FO60840 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.77■□□□□ 0.92
CACNA1FO60840 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CACNA1FO60840 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.77■□□□□ 0.92
CACNA1FO60840 AL136317.3-201ENST00000618497 906 ntBASIC20.77■□□□□ 0.92
CACNA1FO60840 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.77■□□□□ 0.92
CACNA1FO60840 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CACNA1FO60840 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CACNA1FO60840 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CACNA1FO60840 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CACNA1FO60840 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.76■□□□□ 0.91
CACNA1FO60840 AC093214.1-201ENST00000511688 1107 ntBASIC20.76■□□□□ 0.91
CACNA1FO60840 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.76■□□□□ 0.91
CACNA1FO60840 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC20.76■□□□□ 0.91
CACNA1FO60840 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.76■□□□□ 0.91
CACNA1FO60840 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.76■□□□□ 0.91
CACNA1FO60840 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CACNA1FO60840 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CACNA1FO60840 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CACNA1FO60840 AL158211.3-201ENST00000607385 239 ntBASIC20.76■□□□□ 0.91
CACNA1FO60840 AL138828.2-201ENST00000615812 383 ntBASIC20.76■□□□□ 0.91
CACNA1FO60840 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CACNA1FO60840 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CACNA1FO60840 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.75■□□□□ 0.91
CACNA1FO60840 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
CACNA1FO60840 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CACNA1FO60840 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CACNA1FO60840 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 TSSK5P-201ENST00000423978 907 ntBASIC20.75■□□□□ 0.91
CACNA1FO60840 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.75■□□□□ 0.91
CACNA1FO60840 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 AC025678.2-201ENST00000562061 970 ntBASIC20.75■□□□□ 0.91
CACNA1FO60840 PRR29-209ENST00000582540 967 ntTSL 2 BASIC20.75■□□□□ 0.91
CACNA1FO60840 AC018529.1-201ENST00000613063 361 ntBASIC20.75■□□□□ 0.91
CACNA1FO60840 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.75■□□□□ 0.91
CACNA1FO60840 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC20.75■□□□□ 0.91
CACNA1FO60840 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 AC009053.2-201ENST00000563701 2365 ntBASIC20.75■□□□□ 0.91
CACNA1FO60840 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CACNA1FO60840 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1FO60840 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC20.74■□□□□ 0.91
CACNA1FO60840 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CACNA1FO60840 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CACNA1FO60840 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1FO60840 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC20.74■□□□□ 0.91
CACNA1FO60840 KRT18P28-201ENST00000453838 1332 ntBASIC20.74■□□□□ 0.91
CACNA1FO60840 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CACNA1FO60840 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.74■□□□□ 0.91
CACNA1FO60840 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1FO60840 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.74■□□□□ 0.91
CACNA1FO60840 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1FO60840 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.74■□□□□ 0.91
CACNA1FO60840 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1FO60840 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CACNA1FO60840 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
CACNA1FO60840 AC100757.3-201ENST00000622361 1406 ntBASIC20.74■□□□□ 0.91
CACNA1FO60840 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.74■□□□□ 0.91
CACNA1FO60840 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC20.74■□□□□ 0.91
CACNA1FO60840 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.74■□□□□ 0.91
CACNA1FO60840 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC20.74■□□□□ 0.91
CACNA1FO60840 AL590560.3-201ENST00000623350 461 ntBASIC20.74■□□□□ 0.91
CACNA1FO60840 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms