Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.52□□□□□ -0.25
HMGB3O15347 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC13.52□□□□□ -0.25
HMGB3O15347 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
HMGB3O15347 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.52□□□□□ -0.25
HMGB3O15347 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
HMGB3O15347 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.52□□□□□ -0.25
HMGB3O15347 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.52□□□□□ -0.25
HMGB3O15347 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HMGB3O15347 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
HMGB3O15347 FN1-202ENST00000336916 8435 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.51□□□□□ -0.25
HMGB3O15347 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.51□□□□□ -0.25
HMGB3O15347 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HMGB3O15347 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 MMD2-204ENST00000612910 778 ntTSL 5 BASIC13.51□□□□□ -0.25
HMGB3O15347 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC13.51□□□□□ -0.25
HMGB3O15347 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
HMGB3O15347 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC13.51□□□□□ -0.25
HMGB3O15347 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HMGB3O15347 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.51□□□□□ -0.25
HMGB3O15347 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC13.51□□□□□ -0.25
HMGB3O15347 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.5□□□□□ -0.25
HMGB3O15347 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HMGB3O15347 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.5□□□□□ -0.25
HMGB3O15347 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 GAD2-202ENST00000376248 680 ntTSL 5 BASIC13.5□□□□□ -0.25
HMGB3O15347 HES2-202ENST00000377836 507 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC13.5□□□□□ -0.25
HMGB3O15347 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC13.5□□□□□ -0.25
HMGB3O15347 AC124947.2-201ENST00000547118 1133 ntBASIC13.5□□□□□ -0.25
HMGB3O15347 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
HMGB3O15347 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC13.5□□□□□ -0.25
HMGB3O15347 AL359736.2-201ENST00000621992 437 ntBASIC13.5□□□□□ -0.25
HMGB3O15347 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 AC116562.4-202ENST00000641738 218 ntBASIC13.5□□□□□ -0.25
HMGB3O15347 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
HMGB3O15347 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 AC007614.5-201ENST00000623424 8892 ntBASIC13.5□□□□□ -0.25
HMGB3O15347 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms