Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 HMGB3P14-201ENST00000494195 599 ntBASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AP002469.2-201ENST00000531724 424 ntBASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AL662844.1-201ENST00000546340 181 ntBASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AC010654.1-201ENST00000615722 808 ntBASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AL031008.1-201ENST00000619963 541 ntBASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS9D1Q9Y2B5 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 AP002414.3-201ENST00000589352 1468 ntBASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 TPM4P1-201ENST00000436100 807 ntBASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 PRSS29P-201ENST00000440800 595 ntBASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 GOSR1-204ENST00000451249 1231 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 CYP2A7P1-201ENST00000595391 815 ntBASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS9D1Q9Y2B5 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 AL031284.1-201ENST00000419297 478 ntBASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 AC108073.2-201ENST00000464002 357 ntBASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 AC012640.2-201ENST00000561606 901 ntBASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
VPS9D1Q9Y2B5 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.65■□□□□ 0.26
VPS9D1Q9Y2B5 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms