Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 AL009183.1-201ENST00000603760 355 ntBASIC17.82■□□□□ 0.44
CISHQ9NSE2 AC068137.2-201ENST00000605408 478 ntBASIC17.82■□□□□ 0.44
CISHQ9NSE2 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 AC002347.1-201ENST00000569543 541 ntBASIC17.81■□□□□ 0.44
CISHQ9NSE2 AP002472.1-201ENST00000577490 586 ntBASIC17.81■□□□□ 0.44
CISHQ9NSE2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CISHQ9NSE2 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.81■□□□□ 0.44
CISHQ9NSE2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 AC109635.5-201ENST00000533593 962 ntBASIC17.8■□□□□ 0.44
CISHQ9NSE2 AC021097.1-201ENST00000607902 574 ntBASIC17.8■□□□□ 0.44
CISHQ9NSE2 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 GGT3P-204ENST00000453783 1664 ntBASIC17.8■□□□□ 0.44
CISHQ9NSE2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CISHQ9NSE2 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.8■□□□□ 0.44
CISHQ9NSE2 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.79■□□□□ 0.44
CISHQ9NSE2 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CISHQ9NSE2 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms