Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AC005052.1-201ENST00000625181 2492 ntBASIC17.25■□□□□ 0.35
USP29Q9HBJ7 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 AL671710.1-201ENST00000610245 2349 ntBASIC17.25■□□□□ 0.35
USP29Q9HBJ7 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 AL512652.2-201ENST00000625156 1716 ntBASIC17.25■□□□□ 0.35
USP29Q9HBJ7 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 UPF3AP3-201ENST00000420996 769 ntBASIC17.25■□□□□ 0.35
USP29Q9HBJ7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 SLC22A20-204ENST00000530038 1673 ntBASIC17.24■□□□□ 0.35
USP29Q9HBJ7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 UNC93B6-202ENST00000528242 690 ntBASIC17.24■□□□□ 0.35
USP29Q9HBJ7 AC107918.2-201ENST00000530817 355 ntBASIC17.24■□□□□ 0.35
USP29Q9HBJ7 MIR3687-2-201ENST00000577708 61 ntBASIC17.24■□□□□ 0.35
USP29Q9HBJ7 MIR3687-1-201ENST00000614492 61 ntBASIC17.24■□□□□ 0.35
USP29Q9HBJ7 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
USP29Q9HBJ7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.23■□□□□ 0.35
USP29Q9HBJ7 RPS15P9-201ENST00000494093 319 ntBASIC17.23■□□□□ 0.35
USP29Q9HBJ7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 AC079781.4-201ENST00000641908 219 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms