Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 AL513523.2-202ENST00000427283 2040 ntBASIC14.67□□□□□ -0.06
NKX3-1Q99801 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 AC009533.2-201ENST00000543664 586 ntBASIC14.67□□□□□ -0.06
NKX3-1Q99801 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 AC004817.3-201ENST00000602957 2129 ntBASIC14.67□□□□□ -0.06
NKX3-1Q99801 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 AC092119.3-201ENST00000612618 583 ntBASIC14.67□□□□□ -0.06
NKX3-1Q99801 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.67□□□□□ -0.06
NKX3-1Q99801 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NKX3-1Q99801 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 AC233702.3-201ENST00000578656 1387 ntBASIC14.66□□□□□ -0.06
NKX3-1Q99801 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 RCN1P2-201ENST00000398357 915 ntBASIC14.66□□□□□ -0.06
NKX3-1Q99801 CHCHD2P8-201ENST00000429873 447 ntBASIC14.66□□□□□ -0.06
NKX3-1Q99801 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
NKX3-1Q99801 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NKX3-1Q99801 KRT18P1-202ENST00000452408 1331 ntBASIC14.66□□□□□ -0.06
NKX3-1Q99801 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.65□□□□□ -0.06
NKX3-1Q99801 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NKX3-1Q99801 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms