Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC42Q96M95 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.12■□□□□ 0.49
CCDC42Q96M95 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC42Q96M95 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.12■□□□□ 0.49
CCDC42Q96M95 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CCDC42Q96M95 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 PCED1CP-201ENST00000419887 785 ntBASIC18.11■□□□□ 0.49
CCDC42Q96M95 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 AL353135.1-201ENST00000606729 504 ntBASIC18.11■□□□□ 0.49
CCDC42Q96M95 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC42Q96M95 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC42Q96M95 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 AC105917.1-201ENST00000506637 2539 ntBASIC18.1■□□□□ 0.49
CCDC42Q96M95 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 AP000867.3-201ENST00000524675 377 ntBASIC18.1■□□□□ 0.49
CCDC42Q96M95 MIR5100-201ENST00000579544 119 ntBASIC18.1■□□□□ 0.49
CCDC42Q96M95 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC42Q96M95 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
CCDC42Q96M95 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 HYMAI-201ENST00000635591 3347 ntBASIC18.09■□□□□ 0.49
CCDC42Q96M95 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC42Q96M95 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 AL049597.2-201ENST00000565575 961 ntBASIC18.09■□□□□ 0.49
CCDC42Q96M95 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
CCDC42Q96M95 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms