Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 RBM17P3-201ENST00000417687 1192 ntBASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 KRT18P31-201ENST00000506277 1292 ntBASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 AL139424.1-201ENST00000607572 797 ntBASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLHC1Q8NHS4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 AC008608.2-201ENST00000606089 416 ntBASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 AC006538.1-201ENST00000567905 1585 ntBASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 AC006277.1-201ENST00000624348 1610 ntBASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLHC1Q8NHS4 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.1■□□□□ 0.17
CLHC1Q8NHS4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms