Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 SLC22A20-204ENST00000530038 1673 ntBASIC16.23■□□□□ 0.19
FOXA1P55317 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
FOXA1P55317 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FOXA1P55317 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.23■□□□□ 0.19
FOXA1P55317 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.23■□□□□ 0.19
FOXA1P55317 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 MIR1224-201ENST00000408193 85 ntBASIC16.22■□□□□ 0.19
FOXA1P55317 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 PMS2P1-201ENST00000431037 1228 ntBASIC16.22■□□□□ 0.19
FOXA1P55317 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 AL121772.3-201ENST00000610840 674 ntBASIC16.22■□□□□ 0.19
FOXA1P55317 REXO1L6P-202ENST00000619970 1078 ntBASIC16.22■□□□□ 0.19
FOXA1P55317 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.22■□□□□ 0.19
FOXA1P55317 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
FOXA1P55317 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
FOXA1P55317 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA1P55317 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA1P55317 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA1P55317 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 KRT8P39-201ENST00000396270 1433 ntBASIC16.21■□□□□ 0.19
FOXA1P55317 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA1P55317 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.21■□□□□ 0.19
FOXA1P55317 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA1P55317 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
FOXA1P55317 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.21■□□□□ 0.19
FOXA1P55317 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 AC021087.4-201ENST00000563761 564 ntBASIC16.21■□□□□ 0.19
FOXA1P55317 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA1P55317 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
FOXA1P55317 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.21■□□□□ 0.19
FOXA1P55317 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.21■□□□□ 0.19
FOXA1P55317 AC131009.4-201ENST00000624048 1740 ntBASIC16.21■□□□□ 0.19
FOXA1P55317 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms