Protein–RNA interactions for Protein: P49450

CENPA, Histone H3-like centromeric protein A, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPAP49450 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.26■□□□□ 0.03
CENPAP49450 AC097637.2-201ENST00000624096 1997 ntBASIC15.26■□□□□ 0.03
CENPAP49450 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CENPAP49450 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.26■□□□□ 0.03
CENPAP49450 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC15.26■□□□□ 0.03
CENPAP49450 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CENPAP49450 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.26■□□□□ 0.03
CENPAP49450 AL591684.3-201ENST00000605187 298 ntBASIC15.26■□□□□ 0.03
CENPAP49450 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.26■□□□□ 0.03
CENPAP49450 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CENPAP49450 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.26■□□□□ 0.03
CENPAP49450 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.26■□□□□ 0.03
CENPAP49450 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.26■□□□□ 0.03
CENPAP49450 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
CENPAP49450 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.26■□□□□ 0.03
CENPAP49450 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CENPAP49450 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
CENPAP49450 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CENPAP49450 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
CENPAP49450 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CENPAP49450 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CENPAP49450 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.26■□□□□ 0.03
CENPAP49450 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.26■□□□□ 0.03
CENPAP49450 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CENPAP49450 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.25■□□□□ 0.03
CENPAP49450 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.25■□□□□ 0.03
CENPAP49450 PMPCAP1-201ENST00000508114 1576 ntBASIC15.25■□□□□ 0.03
CENPAP49450 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CENPAP49450 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.25■□□□□ 0.03
CENPAP49450 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.25■□□□□ 0.03
CENPAP49450 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.25■□□□□ 0.03
CENPAP49450 MIR3180-1-201ENST00000580374 94 ntBASIC15.25■□□□□ 0.03
CENPAP49450 MIR3180-3-201ENST00000584616 94 ntBASIC15.25■□□□□ 0.03
CENPAP49450 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CENPAP49450 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.25■□□□□ 0.03
CENPAP49450 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.25■□□□□ 0.03
CENPAP49450 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CENPAP49450 AC148477.5-201ENST00000625164 1645 ntBASIC15.25■□□□□ 0.03
CENPAP49450 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CENPAP49450 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CENPAP49450 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CENPAP49450 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.24■□□□□ 0.03
CENPAP49450 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.24■□□□□ 0.03
CENPAP49450 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.24■□□□□ 0.03
CENPAP49450 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.24■□□□□ 0.03
CENPAP49450 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 MIR5100-201ENST00000579544 119 ntBASIC15.24■□□□□ 0.03
CENPAP49450 AL445228.2-201ENST00000605589 952 ntBASIC15.24■□□□□ 0.03
CENPAP49450 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.24■□□□□ 0.03
CENPAP49450 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.24■□□□□ 0.03
CENPAP49450 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CENPAP49450 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.24■□□□□ 0.03
CENPAP49450 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CENPAP49450 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms