Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.8■□□□□ 0.12
SOX3P41225 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.8■□□□□ 0.12
SOX3P41225 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.8■□□□□ 0.12
SOX3P41225 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 AC016396.2-201ENST00000562575 1417 ntBASIC15.8■□□□□ 0.12
SOX3P41225 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SOX3P41225 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SOX3P41225 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 PRSS29P-201ENST00000440800 595 ntBASIC15.8■□□□□ 0.12
SOX3P41225 VN2R19P-201ENST00000442399 1052 ntBASIC15.8■□□□□ 0.12
SOX3P41225 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.8■□□□□ 0.12
SOX3P41225 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.8■□□□□ 0.12
SOX3P41225 PGAM5P1-201ENST00000518923 814 ntBASIC15.8■□□□□ 0.12
SOX3P41225 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.8■□□□□ 0.12
SOX3P41225 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.8■□□□□ 0.12
SOX3P41225 AC010654.1-201ENST00000615722 808 ntBASIC15.8■□□□□ 0.12
SOX3P41225 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SOX3P41225 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SOX3P41225 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
SOX3P41225 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
SOX3P41225 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SOX3P41225 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.79■□□□□ 0.12
SOX3P41225 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 AL596257.1-201ENST00000641463 2694 ntBASIC15.79■□□□□ 0.12
SOX3P41225 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.79■□□□□ 0.12
SOX3P41225 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.79■□□□□ 0.12
SOX3P41225 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.79■□□□□ 0.12
SOX3P41225 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.79■□□□□ 0.12
SOX3P41225 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.79■□□□□ 0.12
SOX3P41225 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.79■□□□□ 0.12
SOX3P41225 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SOX3P41225 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
SOX3P41225 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.79■□□□□ 0.12
SOX3P41225 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SOX3P41225 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SOX3P41225 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SOX3P41225 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SOX3P41225 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.78■□□□□ 0.12
SOX3P41225 PCDHB17P-201ENST00000539533 2393 ntBASIC15.78■□□□□ 0.12
SOX3P41225 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
SOX3P41225 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SOX3P41225 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SOX3P41225 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.78■□□□□ 0.12
SOX3P41225 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.78■□□□□ 0.12
SOX3P41225 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.78■□□□□ 0.12
SOX3P41225 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.78■□□□□ 0.12
SOX3P41225 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms