Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CLPTM1O96005 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.89■□□□□ 0.13
CLPTM1O96005 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLPTM1O96005 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.89■□□□□ 0.13
CLPTM1O96005 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLPTM1O96005 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLPTM1O96005 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLPTM1O96005 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.89■□□□□ 0.13
CLPTM1O96005 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.88■□□□□ 0.13
CLPTM1O96005 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.88■□□□□ 0.13
CLPTM1O96005 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.88■□□□□ 0.13
CLPTM1O96005 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC15.88■□□□□ 0.13
CLPTM1O96005 AC104390.1-201ENST00000555663 520 ntBASIC15.88■□□□□ 0.13
CLPTM1O96005 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC15.88■□□□□ 0.13
CLPTM1O96005 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.88■□□□□ 0.13
CLPTM1O96005 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CLPTM1O96005 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.88■□□□□ 0.13
CLPTM1O96005 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
CLPTM1O96005 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 MED29-202ENST00000594368 1471 ntTSL 2 BASIC15.88■□□□□ 0.13
CLPTM1O96005 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.88■□□□□ 0.13
CLPTM1O96005 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CLPTM1O96005 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.88■□□□□ 0.13
CLPTM1O96005 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.88■□□□□ 0.13
CLPTM1O96005 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.88■□□□□ 0.13
CLPTM1O96005 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLPTM1O96005 SNX18-202ENST00000343017 3140 ntBASIC15.88■□□□□ 0.13
CLPTM1O96005 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 STARP1-201ENST00000397973 869 ntBASIC15.87■□□□□ 0.13
CLPTM1O96005 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.87■□□□□ 0.13
CLPTM1O96005 AC005104.2-201ENST00000427818 678 ntBASIC15.87■□□□□ 0.13
CLPTM1O96005 RASA4DP-201ENST00000460726 1199 ntBASIC15.87■□□□□ 0.13
CLPTM1O96005 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.87■□□□□ 0.13
CLPTM1O96005 AC010240.3-201ENST00000607688 395 ntBASIC15.87■□□□□ 0.13
CLPTM1O96005 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 AL157888.1-201ENST00000631930 593 ntBASIC15.87■□□□□ 0.13
CLPTM1O96005 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLPTM1O96005 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.87■□□□□ 0.13
CLPTM1O96005 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CLPTM1O96005 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.86■□□□□ 0.13
CLPTM1O96005 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
CLPTM1O96005 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms