Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
SIX3O95343 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SIX3O95343 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.39■□□□□ 0.22
SIX3O95343 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX3O95343 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.39■□□□□ 0.21
SIX3O95343 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX3O95343 MIR4492-201ENST00000581627 80 ntBASIC16.39■□□□□ 0.21
SIX3O95343 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX3O95343 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX3O95343 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX3O95343 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SIX3O95343 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX3O95343 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SIX3O95343 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.39■□□□□ 0.21
SIX3O95343 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.39■□□□□ 0.21
SIX3O95343 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.39■□□□□ 0.21
SIX3O95343 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SIX3O95343 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.38■□□□□ 0.21
SIX3O95343 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.38■□□□□ 0.21
SIX3O95343 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.38■□□□□ 0.21
SIX3O95343 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 GGT3P-204ENST00000453783 1664 ntBASIC16.38■□□□□ 0.21
SIX3O95343 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.38■□□□□ 0.21
SIX3O95343 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
SIX3O95343 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.38■□□□□ 0.21
SIX3O95343 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.38■□□□□ 0.21
SIX3O95343 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.38■□□□□ 0.21
SIX3O95343 AF228730.7-201ENST00000641842 219 ntBASIC16.38■□□□□ 0.21
SIX3O95343 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.38■□□□□ 0.21
SIX3O95343 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX3O95343 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SIX3O95343 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SIX3O95343 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX3O95343 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SIX3O95343 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SIX3O95343 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.37■□□□□ 0.21
SIX3O95343 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
SIX3O95343 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SIX3O95343 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SIX3O95343 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.37■□□□□ 0.21
SIX3O95343 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX3O95343 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.37■□□□□ 0.21
SIX3O95343 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.37■□□□□ 0.21
SIX3O95343 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.37■□□□□ 0.21
SIX3O95343 CLEC4GP1-201ENST00000596555 870 ntBASIC16.37■□□□□ 0.21
SIX3O95343 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.37■□□□□ 0.21
SIX3O95343 IFNL4P1-201ENST00000607083 540 ntBASIC16.37■□□□□ 0.21
SIX3O95343 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SIX3O95343 AL805961.1-202ENST00000641562 540 ntBASIC16.37■□□□□ 0.21
SIX3O95343 AC107918.4-202ENST00000641623 219 ntBASIC16.37■□□□□ 0.21
SIX3O95343 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms