Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 AC079776.2-201ENST00000641154 1609 ntBASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 AL671710.1-201ENST00000610245 2349 ntBASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRIM49D1C9J1S8 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM49D1C9J1S8 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.83■□□□□ 0.29
TRIM49D1C9J1S8 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
TRIM49D1C9J1S8 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 ABCD1P5-201ENST00000445663 754 ntBASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 TSPY26P-202ENST00000565928 3884 ntBASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 AC116407.4-201ENST00000623319 1061 ntBASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
TRIM49D1C9J1S8 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 POM121L3P-201ENST00000419331 1163 ntBASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 AL353135.1-201ENST00000606729 504 ntBASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 SNX33P1-201ENST00000592116 1762 ntBASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM49D1C9J1S8 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM49D1C9J1S8 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM49D1C9J1S8 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM49D1C9J1S8 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM49D1C9J1S8 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM49D1C9J1S8 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM49D1C9J1S8 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM49D1C9J1S8 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms