Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 AL356309.3-201ENST00000624132 1934 ntBASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 PRYP5-201ENST00000451909 266 ntBASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 AL022326.1-202ENST00000641533 845 ntBASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
RHBDD3Q9Y3P4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AC064862.7-201ENST00000604520 867 ntBASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AL355877.3-201ENST00000622820 899 ntBASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AC012313.10-201ENST00000623509 926 ntBASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AL139288.1-201ENST00000623748 933 ntBASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
RHBDD3Q9Y3P4 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
RHBDD3Q9Y3P4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RHBDD3Q9Y3P4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
RHBDD3Q9Y3P4 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms