Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ME2P1-201ENST00000426028 1970 ntBASIC17.28■□□□□ 0.36
USP29Q9HBJ7 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
USP29Q9HBJ7 CYP2T1P-202ENST00000641596 2535 ntBASIC17.27■□□□□ 0.36
USP29Q9HBJ7 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 KRT18P3-201ENST00000451602 1288 ntBASIC17.27■□□□□ 0.36
USP29Q9HBJ7 AC092183.1-201ENST00000469884 875 ntBASIC17.27■□□□□ 0.36
USP29Q9HBJ7 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 AC006557.2-201ENST00000592985 1240 ntBASIC17.27■□□□□ 0.36
USP29Q9HBJ7 AL356488.2-201ENST00000602755 427 ntBASIC17.27■□□□□ 0.36
USP29Q9HBJ7 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP29Q9HBJ7 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP29Q9HBJ7 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 RNA5SP416-201ENST00000516838 111 ntBASIC17.26■□□□□ 0.35
USP29Q9HBJ7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 AC012640.2-201ENST00000561606 901 ntBASIC17.26■□□□□ 0.35
USP29Q9HBJ7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 MIR1199-201ENST00000621445 119 ntBASIC17.26■□□□□ 0.35
USP29Q9HBJ7 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 AC026691.1-201ENST00000602502 2017 ntBASIC17.26■□□□□ 0.35
USP29Q9HBJ7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP29Q9HBJ7 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USP29Q9HBJ7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms