Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PAAF1Q9BRP4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PAAF1Q9BRP4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PAAF1Q9BRP4 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 AL035633.1-201ENST00000406139 838 ntBASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 INGX-202ENST00000489074 768 ntBASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 AJ011932.1-201ENST00000621707 465 ntBASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 AC005915.1-201ENST00000624912 2018 ntBASIC17.76■□□□□ 0.43
PAAF1Q9BRP4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 AL603756.1-201ENST00000606511 2163 ntBASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 RNA5SP421-201ENST00000516864 134 ntBASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 IGHV3-42-201ENST00000520410 361 ntBASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 AC069120.2-201ENST00000524091 540 ntBASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 AC018529.1-201ENST00000613063 361 ntBASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.75■□□□□ 0.43
PAAF1Q9BRP4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 BASP1P1-201ENST00000430708 665 ntBASIC17.74■□□□□ 0.43
PAAF1Q9BRP4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms