Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL12A1Q99715 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL12A1Q99715 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.43□□□□□ -0.1
COL12A1Q99715 RN7SL618P-201ENST00000477850 296 ntBASIC14.43□□□□□ -0.1
COL12A1Q99715 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.43□□□□□ -0.1
COL12A1Q99715 MIR3619-201ENST00000579667 83 ntBASIC14.43□□□□□ -0.1
COL12A1Q99715 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL12A1Q99715 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
COL12A1Q99715 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL12A1Q99715 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL12A1Q99715 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.43□□□□□ -0.1
COL12A1Q99715 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
COL12A1Q99715 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL12A1Q99715 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL12A1Q99715 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.43□□□□□ -0.1
COL12A1Q99715 BOLA2P3-201ENST00000404566 256 ntBASIC14.43□□□□□ -0.1
COL12A1Q99715 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC14.43□□□□□ -0.1
COL12A1Q99715 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.43□□□□□ -0.1
COL12A1Q99715 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC14.43□□□□□ -0.1
COL12A1Q99715 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.43□□□□□ -0.1
COL12A1Q99715 SDHAP3-202ENST00000515467 728 ntBASIC14.43□□□□□ -0.1
COL12A1Q99715 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
COL12A1Q99715 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.43□□□□□ -0.1
COL12A1Q99715 AL022328.1-201ENST00000610050 478 ntBASIC14.43□□□□□ -0.1
COL12A1Q99715 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.43□□□□□ -0.1
COL12A1Q99715 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
COL12A1Q99715 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.42□□□□□ -0.1
COL12A1Q99715 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
COL12A1Q99715 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.42□□□□□ -0.1
COL12A1Q99715 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.42□□□□□ -0.1
COL12A1Q99715 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.42□□□□□ -0.1
COL12A1Q99715 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.42□□□□□ -0.1
COL12A1Q99715 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
COL12A1Q99715 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC14.42□□□□□ -0.1
COL12A1Q99715 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.42□□□□□ -0.1
COL12A1Q99715 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.42□□□□□ -0.1
COL12A1Q99715 MIR5189-201ENST00000577370 114 ntBASIC14.42□□□□□ -0.1
COL12A1Q99715 AC010328.2-201ENST00000597698 1111 ntBASIC14.42□□□□□ -0.1
COL12A1Q99715 AL033527.5-202ENST00000641632 1098 ntBASIC14.42□□□□□ -0.1
COL12A1Q99715 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
COL12A1Q99715 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.42□□□□□ -0.1
COL12A1Q99715 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC14.42□□□□□ -0.1
COL12A1Q99715 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
COL12A1Q99715 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC14.42□□□□□ -0.1
COL12A1Q99715 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
COL12A1Q99715 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
COL12A1Q99715 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC14.41□□□□□ -0.1
COL12A1Q99715 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
COL12A1Q99715 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
COL12A1Q99715 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
COL12A1Q99715 MPV17-204ENST00000399052 749 ntTSL 4 BASIC14.41□□□□□ -0.1
COL12A1Q99715 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.41□□□□□ -0.1
COL12A1Q99715 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.41□□□□□ -0.1
COL12A1Q99715 RN7SL555P-201ENST00000584742 339 ntBASIC14.41□□□□□ -0.1
COL12A1Q99715 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
COL12A1Q99715 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.41□□□□□ -0.1
COL12A1Q99715 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.41□□□□□ -0.1
COL12A1Q99715 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.41□□□□□ -0.1
COL12A1Q99715 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.41□□□□□ -0.1
COL12A1Q99715 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.41□□□□□ -0.1
COL12A1Q99715 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.41□□□□□ -0.1
COL12A1Q99715 AC138028.6-201ENST00000616106 1482 ntBASIC14.41□□□□□ -0.1
COL12A1Q99715 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
COL12A1Q99715 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 PRYP6-201ENST00000514804 343 ntBASIC14.4□□□□□ -0.1
COL12A1Q99715 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.4□□□□□ -0.1
COL12A1Q99715 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC14.4□□□□□ -0.1
COL12A1Q99715 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms