Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PPP4R4Q6NUP7 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 MIR3180-1-201ENST00000580374 94 ntBASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 MIR3180-3-201ENST00000584616 94 ntBASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 AC099336.1-202ENST00000602961 463 ntBASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
PPP4R4Q6NUP7 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 HLA-A-202ENST00000376806 1854 ntBASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 DRAXINP1-201ENST00000437611 948 ntBASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PPP4R4Q6NUP7 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms