Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.08■□□□□ 0.49
KRT39Q6A163 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
KRT39Q6A163 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.08■□□□□ 0.49
KRT39Q6A163 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.08■□□□□ 0.49
KRT39Q6A163 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 HMGA1P7-201ENST00000406908 502 ntBASIC18.08■□□□□ 0.48
KRT39Q6A163 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.08■□□□□ 0.48
KRT39Q6A163 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.08■□□□□ 0.48
KRT39Q6A163 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.08■□□□□ 0.48
KRT39Q6A163 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.08■□□□□ 0.48
KRT39Q6A163 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.08■□□□□ 0.48
KRT39Q6A163 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.08■□□□□ 0.48
KRT39Q6A163 AC007064.4-201ENST00000637740 555 ntBASIC18.08■□□□□ 0.48
KRT39Q6A163 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.08■□□□□ 0.48
KRT39Q6A163 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
KRT39Q6A163 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
KRT39Q6A163 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
KRT39Q6A163 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.08■□□□□ 0.48
KRT39Q6A163 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
KRT39Q6A163 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
KRT39Q6A163 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.07■□□□□ 0.48
KRT39Q6A163 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 AL031731.1-201ENST00000642131 2094 ntBASIC18.07■□□□□ 0.48
KRT39Q6A163 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.07■□□□□ 0.48
KRT39Q6A163 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.07■□□□□ 0.48
KRT39Q6A163 AC007967.2-201ENST00000432613 625 ntBASIC18.07■□□□□ 0.48
KRT39Q6A163 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.07■□□□□ 0.48
KRT39Q6A163 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.07■□□□□ 0.48
KRT39Q6A163 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 AC023141.13-201ENST00000604991 943 ntBASIC18.07■□□□□ 0.48
KRT39Q6A163 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.07■□□□□ 0.48
KRT39Q6A163 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
KRT39Q6A163 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
KRT39Q6A163 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.07■□□□□ 0.48
KRT39Q6A163 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
KRT39Q6A163 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
KRT39Q6A163 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.06■□□□□ 0.48
KRT39Q6A163 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
KRT39Q6A163 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 KRT18P2-201ENST00000447938 1258 ntBASIC18.06■□□□□ 0.48
KRT39Q6A163 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.06■□□□□ 0.48
KRT39Q6A163 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.06■□□□□ 0.48
KRT39Q6A163 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.06■□□□□ 0.48
KRT39Q6A163 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
KRT39Q6A163 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.06■□□□□ 0.48
KRT39Q6A163 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.06■□□□□ 0.48
KRT39Q6A163 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
KRT39Q6A163 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
KRT39Q6A163 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
KRT39Q6A163 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.06■□□□□ 0.48
KRT39Q6A163 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
KRT39Q6A163 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.06■□□□□ 0.48
KRT39Q6A163 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
KRT39Q6A163 AC124067.4-201ENST00000519691 2379 ntBASIC18.05■□□□□ 0.48
KRT39Q6A163 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms