Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SF3A1Q15459 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.4■□□□□ 0.7
SF3A1Q15459 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.4■□□□□ 0.7
SF3A1Q15459 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.4■□□□□ 0.7
SF3A1Q15459 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.4■□□□□ 0.7
SF3A1Q15459 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.4■□□□□ 0.7
SF3A1Q15459 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.4■□□□□ 0.7
SF3A1Q15459 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.4■□□□□ 0.7
SF3A1Q15459 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.4■□□□□ 0.7
SF3A1Q15459 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.4■□□□□ 0.7
SF3A1Q15459 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.4■□□□□ 0.7
SF3A1Q15459 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.4■□□□□ 0.7
SF3A1Q15459 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SF3A1Q15459 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SF3A1Q15459 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SF3A1Q15459 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
SF3A1Q15459 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SF3A1Q15459 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 GCK-202ENST00000345378 2421 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.39■□□□□ 0.69
SF3A1Q15459 AF238378.1-201ENST00000526806 358 ntBASIC19.39■□□□□ 0.69
SF3A1Q15459 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.39■□□□□ 0.69
SF3A1Q15459 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.39■□□□□ 0.69
SF3A1Q15459 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SF3A1Q15459 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 AC008741.2-201ENST00000612792 3115 ntBASIC19.39■□□□□ 0.69
SF3A1Q15459 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.39■□□□□ 0.69
SF3A1Q15459 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.39■□□□□ 0.69
SF3A1Q15459 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC19.39■□□□□ 0.69
SF3A1Q15459 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC19.39■□□□□ 0.69
SF3A1Q15459 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.39■□□□□ 0.69
SF3A1Q15459 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.39■□□□□ 0.69
SF3A1Q15459 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SF3A1Q15459 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SF3A1Q15459 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SF3A1Q15459 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.38■□□□□ 0.69
SF3A1Q15459 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.38■□□□□ 0.69
SF3A1Q15459 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
SF3A1Q15459 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SF3A1Q15459 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SF3A1Q15459 AC063926.3-201ENST00000624734 5658 ntBASIC19.38■□□□□ 0.69
SF3A1Q15459 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SF3A1Q15459 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms