Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
CKS1BP61024 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CKS1BP61024 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CKS1BP61024 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC11.84□□□□□ -0.51
CKS1BP61024 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.51
CKS1BP61024 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.51
CKS1BP61024 PBK-203ENST00000522944 1499 ntTSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
CKS1BP61024 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
CKS1BP61024 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 MIR718-201ENST00000390190 70 ntBASIC11.83□□□□□ -0.52
CKS1BP61024 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC11.83□□□□□ -0.52
CKS1BP61024 AP000523.1-201ENST00000398242 1049 ntBASIC11.83□□□□□ -0.52
CKS1BP61024 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 RBM17P1-201ENST00000453646 1190 ntBASIC11.83□□□□□ -0.52
CKS1BP61024 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC11.83□□□□□ -0.52
CKS1BP61024 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
CKS1BP61024 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC11.83□□□□□ -0.52
CKS1BP61024 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
CKS1BP61024 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC11.83□□□□□ -0.52
CKS1BP61024 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CKS1BP61024 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CKS1BP61024 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 MARS-233ENST00000628866 2583 ntTSL 5 BASIC11.82□□□□□ -0.52
CKS1BP61024 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC11.82□□□□□ -0.52
CKS1BP61024 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
CKS1BP61024 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC11.82□□□□□ -0.52
CKS1BP61024 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
CKS1BP61024 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC11.82□□□□□ -0.52
CKS1BP61024 MIR1238-201ENST00000408483 83 ntBASIC11.82□□□□□ -0.52
CKS1BP61024 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC11.82□□□□□ -0.52
CKS1BP61024 REXO2-216ENST00000544196 452 ntTSL 3 BASIC11.82□□□□□ -0.52
CKS1BP61024 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC11.82□□□□□ -0.52
CKS1BP61024 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC11.82□□□□□ -0.52
CKS1BP61024 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CKS1BP61024 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
CKS1BP61024 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms