Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDH4P55283 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDH4P55283 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH4P55283 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 SPDYE11-202ENST00000450699 704 ntBASIC17.09■□□□□ 0.33
CDH4P55283 AP000344.2-201ENST00000512987 629 ntBASIC17.09■□□□□ 0.33
CDH4P55283 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 AL135744.1-201ENST00000565098 629 ntBASIC17.09■□□□□ 0.33
CDH4P55283 SPDYE9P-201ENST00000570642 692 ntBASIC17.09■□□□□ 0.33
CDH4P55283 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH4P55283 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.09■□□□□ 0.33
CDH4P55283 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH4P55283 SPDYE10P-202ENST00000612005 668 ntBASIC17.09■□□□□ 0.33
CDH4P55283 SPDYE8P-202ENST00000612377 668 ntBASIC17.09■□□□□ 0.33
CDH4P55283 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.09■□□□□ 0.33
CDH4P55283 AC105339.1-204ENST00000636249 355 ntBASIC17.09■□□□□ 0.33
CDH4P55283 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH4P55283 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH4P55283 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CDH4P55283 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH4P55283 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 RNF216P1-203ENST00000404404 2427 ntBASIC17.09■□□□□ 0.33
CDH4P55283 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH4P55283 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CDH4P55283 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH4P55283 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.08■□□□□ 0.33
CDH4P55283 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
CDH4P55283 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CDH4P55283 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH4P55283 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.08■□□□□ 0.33
CDH4P55283 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH4P55283 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH4P55283 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
CDH4P55283 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH4P55283 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH4P55283 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH4P55283 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CDH4P55283 AC016027.1-202ENST00000607927 1699 ntBASIC17.08■□□□□ 0.32
CDH4P55283 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CDH4P55283 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.08■□□□□ 0.32
CDH4P55283 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 RPS8P6-201ENST00000426177 609 ntBASIC17.08■□□□□ 0.32
CDH4P55283 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 DNAJB3-202ENST00000449667 1266 ntBASIC17.08■□□□□ 0.32
CDH4P55283 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.08■□□□□ 0.32
CDH4P55283 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.08■□□□□ 0.32
CDH4P55283 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CDH4P55283 AL513210.1-201ENST00000629608 234 ntBASIC17.08■□□□□ 0.32
CDH4P55283 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.08■□□□□ 0.32
CDH4P55283 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDH4P55283 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.08■□□□□ 0.32
CDH4P55283 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH4P55283 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.07■□□□□ 0.32
CDH4P55283 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.07■□□□□ 0.32
CDH4P55283 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.07■□□□□ 0.32
CDH4P55283 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDH4P55283 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms