Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.44■□□□□ 0.38
EPHB3P54753 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.43■□□□□ 0.38
EPHB3P54753 AL023806.1-201ENST00000603994 1649 ntBASIC17.43■□□□□ 0.38
EPHB3P54753 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
EPHB3P54753 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 AL512638.1-201ENST00000457493 794 ntBASIC17.43■□□□□ 0.38
EPHB3P54753 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.43■□□□□ 0.38
EPHB3P54753 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 RARRES2P9-201ENST00000565168 469 ntBASIC17.43■□□□□ 0.38
EPHB3P54753 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.43■□□□□ 0.38
EPHB3P54753 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.43■□□□□ 0.38
EPHB3P54753 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.43■□□□□ 0.38
EPHB3P54753 AC018529.1-201ENST00000613063 361 ntBASIC17.43■□□□□ 0.38
EPHB3P54753 AL390754.1-201ENST00000619088 582 ntBASIC17.43■□□□□ 0.38
EPHB3P54753 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 KRT8P39-201ENST00000396270 1433 ntBASIC17.43■□□□□ 0.38
EPHB3P54753 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
EPHB3P54753 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
EPHB3P54753 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
EPHB3P54753 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
EPHB3P54753 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 AL671710.1-201ENST00000610245 2349 ntBASIC17.42■□□□□ 0.38
EPHB3P54753 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.42■□□□□ 0.38
EPHB3P54753 AP3S2-216ENST00000617003 1561 ntBASIC17.42■□□□□ 0.38
EPHB3P54753 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 PP12613-201ENST00000424958 2230 ntBASIC17.42■□□□□ 0.38
EPHB3P54753 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
EPHB3P54753 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.42■□□□□ 0.38
EPHB3P54753 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 AP002490.2-201ENST00000524791 560 ntBASIC17.42■□□□□ 0.38
EPHB3P54753 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 AC003101.2-201ENST00000612557 442 ntBASIC17.42■□□□□ 0.38
EPHB3P54753 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
EPHB3P54753 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.42■□□□□ 0.38
EPHB3P54753 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
EPHB3P54753 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.42■□□□□ 0.38
EPHB3P54753 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.41■□□□□ 0.38
EPHB3P54753 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.41■□□□□ 0.38
EPHB3P54753 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
EPHB3P54753 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.41■□□□□ 0.38
EPHB3P54753 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.41■□□□□ 0.38
EPHB3P54753 AL035633.1-201ENST00000406139 838 ntBASIC17.41■□□□□ 0.38
EPHB3P54753 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
EPHB3P54753 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.41■□□□□ 0.38
EPHB3P54753 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.41■□□□□ 0.38
EPHB3P54753 AC097493.3-201ENST00000509725 367 ntBASIC17.41■□□□□ 0.38
EPHB3P54753 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.41■□□□□ 0.38
EPHB3P54753 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.41■□□□□ 0.38
EPHB3P54753 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
EPHB3P54753 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms