Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH3P20585 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MSH3P20585 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
MSH3P20585 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH3P20585 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MSH3P20585 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH3P20585 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH3P20585 MIR574-201ENST00000385209 96 ntBASIC16.7■□□□□ 0.26
MSH3P20585 PMS2P1-201ENST00000431037 1228 ntBASIC16.7■□□□□ 0.26
MSH3P20585 AP000347.1-202ENST00000435868 847 ntBASIC16.7■□□□□ 0.26
MSH3P20585 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH3P20585 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH3P20585 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 AC091167.2-201ENST00000579581 588 ntBASIC16.7■□□□□ 0.26
MSH3P20585 MPDU1-223ENST00000582151 728 ntBASIC16.7■□□□□ 0.26
MSH3P20585 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.7■□□□□ 0.26
MSH3P20585 ACTL9-202ENST00000612068 1252 ntBASIC16.7■□□□□ 0.26
MSH3P20585 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH3P20585 AC010507.1-201ENST00000633895 436 ntBASIC16.7■□□□□ 0.26
MSH3P20585 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.7■□□□□ 0.26
MSH3P20585 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH3P20585 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.7■□□□□ 0.26
MSH3P20585 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
MSH3P20585 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
MSH3P20585 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.69■□□□□ 0.26
MSH3P20585 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.69■□□□□ 0.26
MSH3P20585 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.69■□□□□ 0.26
MSH3P20585 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.69■□□□□ 0.26
MSH3P20585 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.69■□□□□ 0.26
MSH3P20585 AP001350.2-201ENST00000625104 1094 ntBASIC16.69■□□□□ 0.26
MSH3P20585 AC007064.4-201ENST00000637740 555 ntBASIC16.69■□□□□ 0.26
MSH3P20585 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.69■□□□□ 0.26
MSH3P20585 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
MSH3P20585 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.69■□□□□ 0.26
MSH3P20585 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.69■□□□□ 0.26
MSH3P20585 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
MSH3P20585 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH3P20585 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH3P20585 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
MSH3P20585 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.68■□□□□ 0.26
MSH3P20585 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
MSH3P20585 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms