Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.23■□□□□ 0.19
CLDN9O95484 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.23■□□□□ 0.19
CLDN9O95484 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.23■□□□□ 0.19
CLDN9O95484 AL121912.1-201ENST00000603683 238 ntBASIC16.23■□□□□ 0.19
CLDN9O95484 AC008735.5-201ENST00000623544 497 ntBASIC16.23■□□□□ 0.19
CLDN9O95484 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.23■□□□□ 0.19
CLDN9O95484 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.23■□□□□ 0.19
CLDN9O95484 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.23■□□□□ 0.19
CLDN9O95484 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN9O95484 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.23■□□□□ 0.19
CLDN9O95484 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN9O95484 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLDN9O95484 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.23■□□□□ 0.19
CLDN9O95484 AL353732.1-201ENST00000569618 1459 ntBASIC16.22■□□□□ 0.19
CLDN9O95484 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CLDN9O95484 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.22■□□□□ 0.19
CLDN9O95484 AC129492.6-201ENST00000611383 1305 ntBASIC16.22■□□□□ 0.19
CLDN9O95484 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CLDN9O95484 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CLDN9O95484 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 KRT8P39-201ENST00000396270 1433 ntBASIC16.22■□□□□ 0.19
CLDN9O95484 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.22■□□□□ 0.19
CLDN9O95484 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CLDN9O95484 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.22■□□□□ 0.19
CLDN9O95484 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.22■□□□□ 0.19
CLDN9O95484 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.22■□□□□ 0.19
CLDN9O95484 AC008667.4-201ENST00000607370 168 ntBASIC16.22■□□□□ 0.19
CLDN9O95484 TP73-AS1-207ENST00000624167 988 ntBASIC16.22■□□□□ 0.19
CLDN9O95484 AC092364.2-201ENST00000596710 2692 ntBASIC16.22■□□□□ 0.19
CLDN9O95484 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.22■□□□□ 0.19
CLDN9O95484 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.22■□□□□ 0.19
CLDN9O95484 AL671710.1-201ENST00000610245 2349 ntBASIC16.22■□□□□ 0.19
CLDN9O95484 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.22■□□□□ 0.19
CLDN9O95484 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLDN9O95484 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.21■□□□□ 0.19
CLDN9O95484 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
CLDN9O95484 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.21■□□□□ 0.19
CLDN9O95484 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
CLDN9O95484 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CLDN9O95484 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.21■□□□□ 0.19
CLDN9O95484 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.21■□□□□ 0.19
CLDN9O95484 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.21■□□□□ 0.19
CLDN9O95484 PMS2P1-201ENST00000431037 1228 ntBASIC16.21■□□□□ 0.19
CLDN9O95484 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.21■□□□□ 0.19
CLDN9O95484 AF186996.4-201ENST00000467186 377 ntBASIC16.21■□□□□ 0.19
CLDN9O95484 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 AC107918.2-201ENST00000530817 355 ntBASIC16.21■□□□□ 0.19
CLDN9O95484 AC105339.3-201ENST00000560043 636 ntBASIC16.21■□□□□ 0.19
CLDN9O95484 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.21■□□□□ 0.19
CLDN9O95484 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.21■□□□□ 0.19
CLDN9O95484 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 AL356488.2-201ENST00000602755 427 ntBASIC16.21■□□□□ 0.19
CLDN9O95484 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.21■□□□□ 0.19
CLDN9O95484 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.21■□□□□ 0.19
CLDN9O95484 PGM5P2-202ENST00000637225 1043 ntBASIC16.21■□□□□ 0.19
CLDN9O95484 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.21■□□□□ 0.19
CLDN9O95484 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CLDN9O95484 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms