Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMA1Q9UHB6 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 AC006449.6-201ENST00000612330 2296 ntBASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SLC25A6P2-201ENST00000497974 877 ntBASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SART3-203ENST00000546611 1184 ntBASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 AC131009.4-201ENST00000624048 1740 ntBASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SLC22A20-204ENST00000530038 1673 ntBASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 OR6D1P-203ENST00000641209 4860 ntBASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMA1Q9UHB6 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMA1Q9UHB6 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMA1Q9UHB6 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.33■□□□□ 0.53
LIMA1Q9UHB6 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMA1Q9UHB6 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMA1Q9UHB6 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMA1Q9UHB6 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMA1Q9UHB6 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 PMS2P1-201ENST00000431037 1228 ntBASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 FGFR3P6-201ENST00000457012 610 ntBASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMA1Q9UHB6 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 MTDHP4-201ENST00000600287 670 ntBASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms