Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC39Q9UFE4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 SIGLEC30P-201ENST00000455569 941 ntBASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 AC092053.1-201ENST00000605787 1936 ntBASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC39Q9UFE4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 NUS1P1-201ENST00000446295 882 ntBASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 FOSL1P1-201ENST00000511041 816 ntBASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC39Q9UFE4 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC39Q9UFE4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms