Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 AL031055.1-201ENST00000606362 631 ntBASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 AC027601.4-201ENST00000611259 610 ntBASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 FAM197Y3-203ENST00000618346 717 ntBASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BLOC1S4Q9NUP1 HCG11-201ENST00000411553 5696 ntBASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 MED15P5-201ENST00000423150 992 ntBASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AP000347.1-202ENST00000435868 847 ntBASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 KRT18P3-201ENST00000451602 1288 ntBASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AC007064.4-201ENST00000637740 555 ntBASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 AC092919.2-201ENST00000623631 1645 ntBASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.6■□□□□ 0.57
BLOC1S4Q9NUP1 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 MIR574-201ENST00000385209 96 ntBASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 AL022342.1-201ENST00000400363 863 ntBASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 MIR3909-201ENST00000579518 119 ntBASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms