Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SKA3Q8IX90 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SKA3Q8IX90 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 OR6D1P-203ENST00000641209 4860 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 AL021920.2-201ENST00000624828 1351 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 IGHV3-22-201ENST00000520721 359 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 AC004790.2-201ENST00000623588 572 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 PCDHB17P-201ENST00000539533 2393 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
SKA3Q8IX90 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.9□□□□□ -0.02
SKA3Q8IX90 TUBB8P12-201ENST00000308911 1335 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 TUBB7P-202ENST00000428444 1305 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 TUBB8P7-204ENST00000567960 1332 ntBASIC14.9□□□□□ -0.02
SKA3Q8IX90 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 AC002310.6-201ENST00000624451 1377 ntBASIC14.89□□□□□ -0.03
SKA3Q8IX90 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.89□□□□□ -0.03
SKA3Q8IX90 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 SLC25A6P2-201ENST00000497974 877 ntBASIC14.89□□□□□ -0.03
SKA3Q8IX90 RNA5SP415-201ENST00000517246 115 ntBASIC14.89□□□□□ -0.03
SKA3Q8IX90 UNC93B6-202ENST00000528242 690 ntBASIC14.89□□□□□ -0.03
SKA3Q8IX90 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 AC106886.4-201ENST00000623557 2502 ntBASIC14.89□□□□□ -0.03
SKA3Q8IX90 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.89□□□□□ -0.03
SKA3Q8IX90 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SKA3Q8IX90 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SKA3Q8IX90 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms