Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 HLA-J-202ENST00000469281 1241 ntBASIC16.38■□□□□ 0.21
VRK3Q8IV63 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 ALOX12P2-203ENST00000570921 1945 ntBASIC16.38■□□□□ 0.21
VRK3Q8IV63 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 RNU1-129P-201ENST00000384064 167 ntBASIC16.37■□□□□ 0.21
VRK3Q8IV63 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.37■□□□□ 0.21
VRK3Q8IV63 U1.21-201ENST00000580816 167 ntBASIC16.37■□□□□ 0.21
VRK3Q8IV63 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 AL031731.1-201ENST00000642131 2094 ntBASIC16.37■□□□□ 0.21
VRK3Q8IV63 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 AC005052.1-201ENST00000625181 2492 ntBASIC16.37■□□□□ 0.21
VRK3Q8IV63 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VRK3Q8IV63 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.37■□□□□ 0.21
VRK3Q8IV63 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.36■□□□□ 0.21
VRK3Q8IV63 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 PDPK2P-202ENST00000562415 1191 ntBASIC16.36■□□□□ 0.21
VRK3Q8IV63 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 GGT4P-201ENST00000623672 1708 ntBASIC16.36■□□□□ 0.21
VRK3Q8IV63 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.36■□□□□ 0.21
VRK3Q8IV63 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VRK3Q8IV63 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.35■□□□□ 0.21
VRK3Q8IV63 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms