Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 PMS2P1-201ENST00000431037 1228 ntBASIC20.26■□□□□ 0.83
VPS53Q5VIR6 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS53Q5VIR6 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 MED15P5-201ENST00000423150 992 ntBASIC20.25■□□□□ 0.83
VPS53Q5VIR6 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.25■□□□□ 0.83
VPS53Q5VIR6 CXCL1P1-201ENST00000502804 216 ntBASIC20.25■□□□□ 0.83
VPS53Q5VIR6 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 AC027601.4-201ENST00000611259 610 ntBASIC20.25■□□□□ 0.83
VPS53Q5VIR6 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 TUBB8P12-201ENST00000308911 1335 ntBASIC20.25■□□□□ 0.83
VPS53Q5VIR6 TUBB7P-202ENST00000428444 1305 ntBASIC20.25■□□□□ 0.83
VPS53Q5VIR6 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 TUBB8P7-204ENST00000567960 1332 ntBASIC20.25■□□□□ 0.83
VPS53Q5VIR6 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS53Q5VIR6 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 METTL26-205ENST00000397666 726 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 KRT18P3-201ENST00000451602 1288 ntBASIC20.24■□□□□ 0.83
VPS53Q5VIR6 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 PGAM5P1-201ENST00000518923 814 ntBASIC20.24■□□□□ 0.83
VPS53Q5VIR6 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 AC129492.6-201ENST00000611383 1305 ntBASIC20.24■□□□□ 0.83
VPS53Q5VIR6 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS53Q5VIR6 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS53Q5VIR6 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms