Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 AC092171.3-201ENST00000610122 2651 ntBASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 RNF216P1-203ENST00000404404 2427 ntBASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC144BQ3MJ40 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 AC046185.3-201ENST00000623228 1824 ntBASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 FAM185BP-201ENST00000443595 716 ntBASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 AC068137.2-201ENST00000605408 478 ntBASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 AL513210.1-201ENST00000629608 234 ntBASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC144BQ3MJ40 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 PCDHA1-201ENST00000378133 2726 ntBASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 AL135999.2-201ENST00000622438 1686 ntBASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 RNF34-208ENST00000555076 593 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 AC105339.1-204ENST00000636249 355 ntBASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 AL391005.1-201ENST00000623953 2435 ntBASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC144BQ3MJ40 LYSMD4-203ENST00000378904 2122 ntBASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC144BQ3MJ40 MIR770-201ENST00000390219 98 ntBASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms