Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.8■□□□□ 0.44
USP41Q3LFD5 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP41Q3LFD5 PCDHA12-202ENST00000613593 2588 ntBASIC17.8■□□□□ 0.44
USP41Q3LFD5 FO538757.1-201ENST00000623083 1397 ntBASIC17.79■□□□□ 0.44
USP41Q3LFD5 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 AC108860.2-201ENST00000562760 2183 ntBASIC17.79■□□□□ 0.44
USP41Q3LFD5 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 TREML5P-201ENST00000421694 576 ntBASIC17.79■□□□□ 0.44
USP41Q3LFD5 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 KRT18P34-201ENST00000488218 1270 ntBASIC17.79■□□□□ 0.44
USP41Q3LFD5 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 AC138761.1-201ENST00000584393 385 ntBASIC17.79■□□□□ 0.44
USP41Q3LFD5 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP41Q3LFD5 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
USP41Q3LFD5 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 TUBB8P12-201ENST00000308911 1335 ntBASIC17.78■□□□□ 0.44
USP41Q3LFD5 TUBB7P-202ENST00000428444 1305 ntBASIC17.78■□□□□ 0.44
USP41Q3LFD5 TUBB8P7-204ENST00000567960 1332 ntBASIC17.78■□□□□ 0.44
USP41Q3LFD5 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 AL158211.3-201ENST00000607385 239 ntBASIC17.78■□□□□ 0.44
USP41Q3LFD5 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 LINC00895-201ENST00000629028 1637 ntBASIC17.78■□□□□ 0.44
USP41Q3LFD5 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
USP41Q3LFD5 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP41Q3LFD5 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
USP41Q3LFD5 CROCCP2-202ENST00000412962 2773 ntBASIC17.77■□□□□ 0.44
USP41Q3LFD5 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
USP41Q3LFD5 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms