Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.41□□□□□ -0.1
ABCA4P78363 ATP5G2P4-201ENST00000442175 420 ntBASIC14.41□□□□□ -0.1
ABCA4P78363 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.41□□□□□ -0.1
ABCA4P78363 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.41□□□□□ -0.1
ABCA4P78363 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.41□□□□□ -0.1
ABCA4P78363 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
ABCA4P78363 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.41□□□□□ -0.1
ABCA4P78363 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
ABCA4P78363 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.41□□□□□ -0.1
ABCA4P78363 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC14.41□□□□□ -0.1
ABCA4P78363 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
ABCA4P78363 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ABCA4P78363 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
ABCA4P78363 EGFEM1P-202ENST00000431685 1563 ntBASIC14.4□□□□□ -0.1
ABCA4P78363 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.4□□□□□ -0.1
ABCA4P78363 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.4□□□□□ -0.1
ABCA4P78363 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 AC012313.1-201ENST00000593393 3059 ntBASIC14.4□□□□□ -0.1
ABCA4P78363 PP12613-201ENST00000424958 2230 ntBASIC14.4□□□□□ -0.1
ABCA4P78363 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC14.4□□□□□ -0.1
ABCA4P78363 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
ABCA4P78363 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.4□□□□□ -0.1
ABCA4P78363 IGHV3-72-202ENST00000621503 303 ntBASIC14.4□□□□□ -0.1
ABCA4P78363 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
ABCA4P78363 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.4□□□□□ -0.1
ABCA4P78363 AR-207ENST00000612010 3896 ntTSL 5 BASIC14.4□□□□□ -0.1
ABCA4P78363 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 AC022144.1-201ENST00000602255 1580 ntBASIC14.4□□□□□ -0.1
ABCA4P78363 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.4□□□□□ -0.1
ABCA4P78363 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
ABCA4P78363 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.4□□□□□ -0.11
ABCA4P78363 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
ABCA4P78363 AL354751.1-201ENST00000412768 1863 ntBASIC14.39□□□□□ -0.11
ABCA4P78363 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCA4P78363 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCA4P78363 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 MIR346-201ENST00000362234 95 ntBASIC14.39□□□□□ -0.11
ABCA4P78363 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCA4P78363 COX5BP8-201ENST00000416911 349 ntBASIC14.39□□□□□ -0.11
ABCA4P78363 AC245100.3-201ENST00000441281 285 ntBASIC14.39□□□□□ -0.11
ABCA4P78363 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.39□□□□□ -0.11
ABCA4P78363 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.39□□□□□ -0.11
ABCA4P78363 MIR6799-201ENST00000620297 69 ntBASIC14.39□□□□□ -0.11
ABCA4P78363 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.39□□□□□ -0.11
ABCA4P78363 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
ABCA4P78363 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
ABCA4P78363 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 AC016027.1-202ENST00000607927 1699 ntBASIC14.39□□□□□ -0.11
ABCA4P78363 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
ABCA4P78363 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ABCA4P78363 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
ABCA4P78363 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms