Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 AC145285.3-201ENST00000564603 959 ntBASIC17.56■□□□□ 0.4
HDAC4P56524 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.56■□□□□ 0.4
HDAC4P56524 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.56■□□□□ 0.4
HDAC4P56524 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.56■□□□□ 0.4
HDAC4P56524 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 PCDHA14-201ENST00000506751 2298 ntBASIC17.56■□□□□ 0.4
HDAC4P56524 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.56■□□□□ 0.4
HDAC4P56524 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HDAC4P56524 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HDAC4P56524 OR6D1P-203ENST00000641209 4860 ntBASIC17.55■□□□□ 0.4
HDAC4P56524 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 AC131009.4-201ENST00000624048 1740 ntBASIC17.55■□□□□ 0.4
HDAC4P56524 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
HDAC4P56524 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 FAM185BP-201ENST00000443595 716 ntBASIC17.55■□□□□ 0.4
HDAC4P56524 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.55■□□□□ 0.4
HDAC4P56524 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.55■□□□□ 0.4
HDAC4P56524 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.55■□□□□ 0.4
HDAC4P56524 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 AC034105.1-201ENST00000563488 319 ntBASIC17.55■□□□□ 0.4
HDAC4P56524 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.55■□□□□ 0.4
HDAC4P56524 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.55■□□□□ 0.4
HDAC4P56524 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HDAC4P56524 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 AL353732.1-201ENST00000569618 1459 ntBASIC17.55■□□□□ 0.4
HDAC4P56524 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HDAC4P56524 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 AC104109.2-201ENST00000602919 1418 ntBASIC17.55■□□□□ 0.4
HDAC4P56524 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.55■□□□□ 0.4
HDAC4P56524 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
HDAC4P56524 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HDAC4P56524 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC4P56524 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
HDAC4P56524 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC4P56524 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 AL590627.1-203ENST00000421194 1026 ntBASIC17.54■□□□□ 0.4
HDAC4P56524 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 HCG4B-203ENST00000450128 991 ntBASIC17.54■□□□□ 0.4
HDAC4P56524 SLC25A1P1-201ENST00000528351 927 ntBASIC17.54■□□□□ 0.4
HDAC4P56524 AC005412.3-201ENST00000580309 715 ntBASIC17.54■□□□□ 0.4
HDAC4P56524 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
HDAC4P56524 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC4P56524 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.54■□□□□ 0.4
HDAC4P56524 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HDAC4P56524 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC4P56524 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.54■□□□□ 0.4
HDAC4P56524 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HDAC4P56524 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms