Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NUP98P52948 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
NUP98P52948 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
NUP98P52948 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP98P52948 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP98P52948 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.61■□□□□ 0.89
NUP98P52948 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.61■□□□□ 0.89
NUP98P52948 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.6■□□□□ 0.89
NUP98P52948 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.6■□□□□ 0.89
NUP98P52948 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.6■□□□□ 0.89
NUP98P52948 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
NUP98P52948 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.6■□□□□ 0.89
NUP98P52948 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 AC007431.3-201ENST00000623221 587 ntBASIC20.6■□□□□ 0.89
NUP98P52948 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.6■□□□□ 0.89
NUP98P52948 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NUP98P52948 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.6■□□□□ 0.89
NUP98P52948 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
NUP98P52948 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.6■□□□□ 0.89
NUP98P52948 AC044860.1-202ENST00000559481 777 ntBASIC20.6■□□□□ 0.89
NUP98P52948 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.6■□□□□ 0.89
NUP98P52948 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NUP98P52948 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC20.59■□□□□ 0.89
NUP98P52948 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20.59■□□□□ 0.89
NUP98P52948 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NUP98P52948 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NUP98P52948 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
NUP98P52948 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.59■□□□□ 0.89
NUP98P52948 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.59■□□□□ 0.89
NUP98P52948 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.59■□□□□ 0.89
NUP98P52948 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.59■□□□□ 0.89
NUP98P52948 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.59■□□□□ 0.89
NUP98P52948 CR383656.12-201ENST00000549567 513 ntBASIC20.59■□□□□ 0.89
NUP98P52948 AC132938.2-201ENST00000579188 680 ntBASIC20.59■□□□□ 0.89
NUP98P52948 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.59■□□□□ 0.89
NUP98P52948 AL591163.1-201ENST00000641757 987 ntBASIC20.59■□□□□ 0.89
NUP98P52948 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC20.59■□□□□ 0.89
NUP98P52948 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NUP98P52948 AC018470.1-201ENST00000624790 3129 ntBASIC20.59■□□□□ 0.89
NUP98P52948 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.59■□□□□ 0.89
NUP98P52948 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.59■□□□□ 0.89
NUP98P52948 PCGF3-213ENST00000620529 1899 ntBASIC20.58■□□□□ 0.89
NUP98P52948 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NUP98P52948 AL589702.1-201ENST00000641229 1509 ntBASIC20.58■□□□□ 0.89
NUP98P52948 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUP98P52948 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
NUP98P52948 RN7SL618P-201ENST00000477850 296 ntBASIC20.58■□□□□ 0.89
NUP98P52948 TP53TG3HP-202ENST00000569755 579 ntBASIC20.58■□□□□ 0.89
NUP98P52948 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.58■□□□□ 0.89
NUP98P52948 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NUP98P52948 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.58■□□□□ 0.89
NUP98P52948 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUP98P52948 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NUP98P52948 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
NUP98P52948 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.58■□□□□ 0.88
NUP98P52948 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NUP98P52948 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
NUP98P52948 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NUP98P52948 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC20.57■□□□□ 0.88
NUP98P52948 AL023806.1-201ENST00000603994 1649 ntBASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms