Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.93■□□□□ 0.3
PTPN4P29074 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.93■□□□□ 0.3
PTPN4P29074 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 RNA5SP419-201ENST00000515908 135 ntBASIC16.93■□□□□ 0.3
PTPN4P29074 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
PTPN4P29074 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PTPN4P29074 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN4P29074 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN4P29074 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN4P29074 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PTPN4P29074 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.92■□□□□ 0.3
PTPN4P29074 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.92■□□□□ 0.3
PTPN4P29074 AL031284.1-201ENST00000419297 478 ntBASIC16.92■□□□□ 0.3
PTPN4P29074 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.92■□□□□ 0.3
PTPN4P29074 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.92■□□□□ 0.3
PTPN4P29074 AC023511.2-201ENST00000618803 211 ntBASIC16.92■□□□□ 0.3
PTPN4P29074 AL355877.3-201ENST00000622820 899 ntBASIC16.92■□□□□ 0.3
PTPN4P29074 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.92■□□□□ 0.3
PTPN4P29074 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN4P29074 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PTPN4P29074 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.92■□□□□ 0.3
PTPN4P29074 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PTPN4P29074 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PTPN4P29074 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN4P29074 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN4P29074 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.91■□□□□ 0.3
PTPN4P29074 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PTPN4P29074 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PTPN4P29074 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 RBM17P3-201ENST00000417687 1192 ntBASIC16.91■□□□□ 0.3
PTPN4P29074 KRT18P65-201ENST00000439811 1286 ntBASIC16.91■□□□□ 0.3
PTPN4P29074 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.91■□□□□ 0.3
PTPN4P29074 AC093909.1-201ENST00000504731 1122 ntBASIC16.91■□□□□ 0.3
PTPN4P29074 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.91■□□□□ 0.3
PTPN4P29074 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.91■□□□□ 0.3
PTPN4P29074 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.91■□□□□ 0.3
PTPN4P29074 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.91■□□□□ 0.3
PTPN4P29074 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 AL138831.2-201ENST00000606564 490 ntBASIC16.91■□□□□ 0.3
PTPN4P29074 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
PTPN4P29074 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PTPN4P29074 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN4P29074 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms