Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCA1P28370 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AC004461.1-201ENST00000412461 403 ntBASIC19.18■□□□□ 0.66
SMARCA1P28370 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCA1P28370 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCA1P28370 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCA1P28370 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 SSH2-211ENST00000590153 570 ntTSL 4 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCA1P28370 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AL691403.2-201ENST00000618460 490 ntBASIC19.18■□□□□ 0.66
SMARCA1P28370 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCA1P28370 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.18■□□□□ 0.66
SMARCA1P28370 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SMARCA1P28370 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMARCA1P28370 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCA1P28370 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.18■□□□□ 0.66
SMARCA1P28370 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.18■□□□□ 0.66
SMARCA1P28370 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCA1P28370 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.17■□□□□ 0.66
SMARCA1P28370 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 AC106820.2-201ENST00000563775 3264 ntBASIC19.17■□□□□ 0.66
SMARCA1P28370 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SMARCA1P28370 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.17■□□□□ 0.66
SMARCA1P28370 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SMARCA1P28370 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMARCA1P28370 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 MIR346-201ENST00000362234 95 ntBASIC19.17■□□□□ 0.66
SMARCA1P28370 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.17■□□□□ 0.66
SMARCA1P28370 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 DNAJB3-202ENST00000449667 1266 ntBASIC19.17■□□□□ 0.66
SMARCA1P28370 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SMARCA1P28370 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.17■□□□□ 0.66
SMARCA1P28370 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.17■□□□□ 0.66
SMARCA1P28370 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC19.17■□□□□ 0.66
SMARCA1P28370 AP001160.2-201ENST00000596071 487 ntBASIC19.17■□□□□ 0.66
SMARCA1P28370 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
SMARCA1P28370 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMARCA1P28370 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCA1P28370 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.17■□□□□ 0.66
SMARCA1P28370 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMARCA1P28370 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMARCA1P28370 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SMARCA1P28370 FZD10-202ENST00000539839 3282 ntBASIC19.17■□□□□ 0.66
SMARCA1P28370 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMARCA1P28370 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC19.17■□□□□ 0.66
SMARCA1P28370 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SMARCA1P28370 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SMARCA1P28370 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
SMARCA1P28370 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.16■□□□□ 0.66
SMARCA1P28370 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 SPCS2P4-201ENST00000436160 681 ntBASIC19.16■□□□□ 0.66
SMARCA1P28370 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.16■□□□□ 0.66
SMARCA1P28370 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 AC004835.2-201ENST00000603762 682 ntBASIC19.16■□□□□ 0.66
SMARCA1P28370 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SMARCA1P28370 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.16■□□□□ 0.66
SMARCA1P28370 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMARCA1P28370 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms