Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A3P25940 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
COL5A3P25940 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL5A3P25940 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A3P25940 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.78■□□□□ 0.92
COL5A3P25940 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.78■□□□□ 0.92
COL5A3P25940 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A3P25940 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
COL5A3P25940 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.78■□□□□ 0.92
COL5A3P25940 AC020765.3-201ENST00000613051 740 ntBASIC20.78■□□□□ 0.92
COL5A3P25940 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 AL512652.2-201ENST00000625156 1716 ntBASIC20.78■□□□□ 0.92
COL5A3P25940 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.77■□□□□ 0.92
COL5A3P25940 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A3P25940 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A3P25940 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.77■□□□□ 0.92
COL5A3P25940 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A3P25940 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A3P25940 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A3P25940 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL5A3P25940 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC20.77■□□□□ 0.92
COL5A3P25940 COX11-210ENST00000639671 696 ntBASIC20.77■□□□□ 0.92
COL5A3P25940 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
COL5A3P25940 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL5A3P25940 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL5A3P25940 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL5A3P25940 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
COL5A3P25940 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
COL5A3P25940 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.77■□□□□ 0.91
COL5A3P25940 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
COL5A3P25940 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.76■□□□□ 0.91
COL5A3P25940 AC092658.1-201ENST00000505836 891 ntBASIC20.76■□□□□ 0.91
COL5A3P25940 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.76■□□□□ 0.91
COL5A3P25940 MIR4525-201ENST00000580000 75 ntBASIC20.76■□□□□ 0.91
COL5A3P25940 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.76■□□□□ 0.91
COL5A3P25940 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.76■□□□□ 0.91
COL5A3P25940 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.76■□□□□ 0.91
COL5A3P25940 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.76■□□□□ 0.91
COL5A3P25940 CYP4F24P-201ENST00000586049 1580 ntBASIC20.76■□□□□ 0.91
COL5A3P25940 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL5A3P25940 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
COL5A3P25940 AL158212.4-201ENST00000624062 1286 ntBASIC20.75■□□□□ 0.91
COL5A3P25940 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
COL5A3P25940 RELA-227ENST00000615805 2236 ntTSL 5 BASIC20.75■□□□□ 0.91
COL5A3P25940 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COL5A3P25940 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
COL5A3P25940 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
COL5A3P25940 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
COL5A3P25940 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
COL5A3P25940 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
COL5A3P25940 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.75■□□□□ 0.91
COL5A3P25940 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC20.75■□□□□ 0.91
COL5A3P25940 HIST3H2BA-201ENST00000436555 524 ntBASIC20.75■□□□□ 0.91
COL5A3P25940 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.75■□□□□ 0.91
COL5A3P25940 SDHAP3-202ENST00000515467 728 ntBASIC20.75■□□□□ 0.91
COL5A3P25940 LINC01115-203ENST00000606068 577 ntBASIC20.75■□□□□ 0.91
COL5A3P25940 MIR6775-201ENST00000617557 69 ntBASIC20.75■□□□□ 0.91
COL5A3P25940 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL5A3P25940 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
COL5A3P25940 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.75■□□□□ 0.91
COL5A3P25940 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL5A3P25940 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
COL5A3P25940 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 AC067852.2-201ENST00000590513 2313 ntBASIC20.74■□□□□ 0.91
COL5A3P25940 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL5A3P25940 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
COL5A3P25940 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
COL5A3P25940 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms