Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.94■□□□□ 0.3
VIMP08670 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VIMP08670 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VIMP08670 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.93■□□□□ 0.3
VIMP08670 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.93■□□□□ 0.3
VIMP08670 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.93■□□□□ 0.3
VIMP08670 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VIMP08670 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VIMP08670 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VIMP08670 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VIMP08670 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.92■□□□□ 0.3
VIMP08670 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 ABHD17AP1-201ENST00000358206 933 ntBASIC16.92■□□□□ 0.3
VIMP08670 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 AC107956.1-201ENST00000494359 873 ntBASIC16.92■□□□□ 0.3
VIMP08670 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.92■□□□□ 0.3
VIMP08670 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.92■□□□□ 0.3
VIMP08670 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.92■□□□□ 0.3
VIMP08670 NEK4P2-201ENST00000580004 1012 ntBASIC16.92■□□□□ 0.3
VIMP08670 AC113410.3-201ENST00000623366 203 ntBASIC16.92■□□□□ 0.3
VIMP08670 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VIMP08670 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.92■□□□□ 0.3
VIMP08670 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.92■□□□□ 0.3
VIMP08670 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
VIMP08670 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VIMP08670 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.92■□□□□ 0.3
VIMP08670 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.91■□□□□ 0.3
VIMP08670 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.91■□□□□ 0.3
VIMP08670 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VIMP08670 AC022532.1-201ENST00000624563 1728 ntBASIC16.91■□□□□ 0.3
VIMP08670 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
VIMP08670 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VIMP08670 UNC93B2-201ENST00000285383 730 ntBASIC16.91■□□□□ 0.3
VIMP08670 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.91■□□□□ 0.3
VIMP08670 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VIMP08670 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.91■□□□□ 0.3
VIMP08670 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VIMP08670 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms