Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
LDLRP01130 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.31■□□□□ 0.2
LDLRP01130 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.31■□□□□ 0.2
LDLRP01130 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.31■□□□□ 0.2
LDLRP01130 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDLRP01130 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LDLRP01130 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.3■□□□□ 0.2
LDLRP01130 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.3■□□□□ 0.2
LDLRP01130 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.3■□□□□ 0.2
LDLRP01130 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.3■□□□□ 0.2
LDLRP01130 AC096582.2-201ENST00000510860 516 ntBASIC16.3■□□□□ 0.2
LDLRP01130 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.3■□□□□ 0.2
LDLRP01130 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.3■□□□□ 0.2
LDLRP01130 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.3■□□□□ 0.2
LDLRP01130 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 AC145285.3-201ENST00000564603 959 ntBASIC16.3■□□□□ 0.2
LDLRP01130 AC027601.4-201ENST00000611259 610 ntBASIC16.3■□□□□ 0.2
LDLRP01130 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LDLRP01130 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDLRP01130 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.29■□□□□ 0.2
LDLRP01130 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.29■□□□□ 0.2
LDLRP01130 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.29■□□□□ 0.2
LDLRP01130 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 AC007950.2-201ENST00000615045 2347 ntBASIC16.29■□□□□ 0.2
LDLRP01130 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.29■□□□□ 0.2
LDLRP01130 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 RPS2P28-201ENST00000314255 741 ntBASIC16.29■□□□□ 0.2
LDLRP01130 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 RPSAP43-201ENST00000402237 625 ntBASIC16.29■□□□□ 0.2
LDLRP01130 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
LDLRP01130 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.29■□□□□ 0.2
LDLRP01130 HNRNPDP1-201ENST00000439535 754 ntBASIC16.29■□□□□ 0.2
LDLRP01130 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.29■□□□□ 0.2
LDLRP01130 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.29■□□□□ 0.2
LDLRP01130 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.29■□□□□ 0.2
LDLRP01130 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.29■□□□□ 0.2
LDLRP01130 AL355877.3-201ENST00000622820 899 ntBASIC16.29■□□□□ 0.2
LDLRP01130 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.29■□□□□ 0.2
LDLRP01130 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDLRP01130 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LDLRP01130 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.29■□□□□ 0.2
LDLRP01130 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.29■□□□□ 0.2
LDLRP01130 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms